ROI intensity curves

This function enables drawing of dynamic changes along multiple image volumes for one or multiple ROI's.

ROI intensity iconMain Menu Measure->ROI->View->ROI Intensity Curves

nordicICE can display intensity curves for one or multiple ROI s. This menu option can be activated when the ROI option is activated, and a ROI is displayed on the image (see “ Region of interest (ROI) Analysis”).

A ROI intensity curve is a curve that reflects the change in ROI value across the images in the loaded image series. This is relevant to e.g. assess ROI changes in a dynamic time series or as a function of another relevant parameter (e.g. echo time in a multiecho series). Note that such ROI intensity curves can also be obtained for four dimensional datasets. In this case the ROI intensity curve is always obtained along the time-axis (or echo time axis) if the image series is multislice. Various curve fitting routines can also be applied to the ROI curve (see below) and one or multiple ROI curves can be copied to/from the Windows clipboard or saved as a text file.

The current ROI curve is updated dynamically upon changing the current ROI in the image. If multiple ROI curves are displayed (see below) any curve can be made active by clicking on the curve of interest. The active curve is displayed with square gray point labels. 

You can add a new curve by selecting Add curve from the Curve menu. This will freeze the ROI for the current curve and keep it displayed while you change the ROI. A new ROI curve will be displayed showing the values for the changed ROI. 

You can remove the active curve by selecting Delete curve from the Curve menu.

You can apply a curve fitting algorithm to the active curve. Select Data modelling ... from the Processing menu to do this. If no curve is active, the curve fit will be applied to the last created curve.

You can perform transforms on the active curve by selecting Transforms from the Processing menu.  The following transformations are available:

  • Fast Fourier Transform
  • Fourier based derivative estimate (differentiation)
  • Auto-correlation
  • Low pass filter

The scaling of the axis is normally determined automatically to make the whole curve fit within the window. If you want to change the scaling or select which parts of the curve are visible, you can select the Options from the Axis menu.

You can modify the ROIs used for one or more of the datapoints on a curve. Select ROI update from the Scope menu, and then select which set of  ROIs you want to update.

You can load or save ROI intensity data by using the File menu.

The figure and the ROI intensity data can be copied to the clipboard, and intensity data on the clipboard can be pasted to the ROI intensity window. This functionality is available from the Edit menu.

Related topics:

Draw and Measure Pixel Values in a Region of Interest (ROI)
ROI intensity curves for multi-dimensional datasets
Axis options